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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015913642.1_cds_XP_016463683.1_56784
CDS Infomation

[gene=LOC107786678] [db_xref=GeneID:107786678] [protein=RAB6A-GEF complex partner protein 1-like isoform X2] [protein_id=XP_016463683.1] [location=join(32751..32903,32984..33091,33758..33906,34917..34998,35161..35585,36320..36752,36863..37086,37989..38184,38327..38472,38613..38787,38868..38906)] [gbkey=CDS]
Sequence

ATGTATATGGCATATGGATGGCCACAGGTCATCCCTATGGAATCAACTGGGTTATGCCCT
TCTTCTTCTCAGCAAATTGTATACCTGAAGCTCATCAATCGCTTATTGCTTGTCGTTTCA
CCTACTCATCTTGAACTATGGTCCTCCTCCCAGCATAGAGTGAGATTGGGCAAGTACAAG
AGAAGCTCTGATTCAATTCAGAAGGAAGGGGAGAATTTGCGCGCCGTTTGGAGTCCTGAT
ACCAAATTGATTGCCGTCCTTACCTCTTCCTTCTATCTACACATTCTGAAGGTCCATTTT
ACAGAAAGGAAAATACAAATTGGAGGCAAACAACCAACTGGTTTGTTTCTAGCAAGCATA
GCTTTGCTCTTGAATGAACAAGTGCCTTTTGCTAACAGGAACTTGACAATGAGCAATATG
GTTTGCGACAACAAACATATGATAGTTGGGCTTTCTGATGGATCTCTGTATAATATATCC
TGGAAGGGCGAGTTTTGTGGGGCCTTTGATGCCTTTGATCTTGATGTTCAGCCTCATGAT
GGCAGTGGCATTCCTAAACTAGCAAGTTCTTTGGAAAACGGTCTTGCTTCTGGCGGGAGT
TTATCTTTTTCTAAATTTAGTCATCATTCGTTGAATAACTCTGCCGTGGTCCACTTAGAA
TTCTCCTTACCCTTGAGGTTGCTTGTTGTGCTATTTTCTGATGGACAACTGGTCTTGTGT
TCTGTGAGCAAAAAGGGTCTGAAGCAAATGGAGTCTATCAAAGCTGAAAAGAGACTGGGC
TCTGGTGATGCTGTATGTGCTGCAGTTGCTTCAGAACAACAACTCCTTGTTGTTGGTACG
AGAAGAGGTGTTGTTGAGTTGTATGACATTGCAGAATCTGCTTCACTTATGCGTTCTGTT
TCTCTGTATGATTGGGGATATTCAGTGGAAGATACTGGGGCTGTCAGTTGTGTTGCATGG
ACACCTGATAATTCTGCTTTTGCAGTTGGGTGGAAGTTAAGAGGGCTAACAGTTTGGTCT
GTTTCTGGCTGTCGCTTGATGTCCACAATTCGTCAAATTGGCTTAAGTTCTGCGTCTTCT
CCAGTTGTCAAACGGAATCAGGAATGTAAATATGAACCTATGATGAGTGGTACCTCGCTG
ATGAACTGGGATGAATATGGATACAAGCTTTATGCTATTGAAGAAGGATCTCCAGAGAGA
ATTATTGCATTCTCTTTTGGAAAATGCTGTCTGAACAGAGGAGTCTCTGGGATTACTTAT
GTCCGACAAGTAATCTATGGTGAAGATCGGTTGCTTGTTGTGCAGTCAGAAGATACTGAT
GAACTAAAACTCTTGCATCTTAGCCTTCCAGTTTCCTACATCTCTCAGAATTGGCCAGTT
CAACATGTGGCAGCTAGTAAGGATGGAATGTACTTAGCAGCTGCTGGCCTTCATGGACTG
ATCTTATATGACATAAGATTGAAAAAGTGGCGAGTTTTTGGAGATGTCACTCAGGAACAA
AAGATCCAGTGCAGAGGCTTGTTATGGCTTGGGAAGATTGTGGTTGTCTGCAACTACGAT
GATTCTTCTGACGGGTATGAATTGCTTTTCTATCCCAGATATCACCTTGATCATAGTTCA
CTACTATGTCGGAAACCTTTGCTTACCAAACCGATCGTCATGGATGTTTACCAAGATTAT
CTACTTGTCACTTACCGGCCCTTTGATGTCCATATTTACCATGTGAAATTATCTGGTGAA
CTAACACCTTCGAGCTCCCCCGATTTACAGCTTTCTACAGTACGAGAGCTATCAATCATG
ACTGCAAAGAGCCATCCTGCTTCAATGCGTTTTATTCCTGATCAGCTCCCAAGAGAAAGC
GTTGCAGGGAATGGTGGCCTGTCAACTTCTTTGGATCTGTCCAGAGAGCCTACCCGATGC
TTAATACTGCGGACAAATGGAGAGCTTTCACTTCTTGATTTGGATGAGGGGAGAGAAAGA
GAACTCACTGACTCTGTGGAGTTGTTTTGGGTTACCTGTGGTCAGTCAGAGGAGAAAGCA
AGCTTGATTGAGGAGGTTTCATGGTTAGACTATGGCCACCGAGGAATGCAGCTCATTATT
ACAGGTTTGGTATCCATCTCCCAGTGTTGA

Peptide Sequence

PEP ID

XP_016463683.1
PEP Infomation

PREDICTED: RAB6A-GEF complex partner protein 1-like isoform X2 [Nicotiana tabacum]
Sequence

MYMAYGWPQVIPMESTGLCPSSSQQIVYLKLINRLLLVVSPTHLELWSSSQHRVRLGKYK
RSSDSIQKEGENLRAVWSPDTKLIAVLTSSFYLHILKVHFTERKIQIGGKQPTGLFLASI
ALLLNEQVPFANRNLTMSNMVCDNKHMIVGLSDGSLYNISWKGEFCGAFDAFDLDVQPHD
GSGIPKLASSLENGLASGGSLSFSKFSHHSLNNSAVVHLEFSLPLRLLVVLFSDGQLVLC
SVSKKGLKQMESIKAEKRLGSGDAVCAAVASEQQLLVVGTRRGVVELYDIAESASLMRSV
SLYDWGYSVEDTGAVSCVAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSASS
PVVKRNQECKYEPMMSGTSLMNWDEYGYKLYAIEEGSPERIIAFSFGKCCLNRGVSGITY
VRQVIYGEDRLLVVQSEDTDELKLLHLSLPVSYISQNWPVQHVAASKDGMYLAAAGLHGL
ILYDIRLKKWRVFGDVTQEQKIQCRGLLWLGKIVVVCNYDDSSDGYELLFYPRYHLDHSS
LLCRKPLLTKPIVMDVYQDYLLVTYRPFDVHIYHVKLSGELTPSSSPDLQLSTVRELSIM
TAKSHPASMRFIPDQLPRESVAGNGGLSTSLDLSREPTRCLILRTNGELSLLDLDEGRER
ELTDSVELFWVTCGQSEEKASLIEEVSWLDYGHRGMQLIITGLVSISQC

Transcript Sequence

Gene sequence data has not been registered.